Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010512: Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence

NCBI: NC_010512

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia cenocepacia MC0-3 was isolated from soil associated with maize roots. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1110932*13790426973Island text1.4699118.433916.0373Neighbours11BLASTN+IslandViewer 110932.gbk
273483475433819505Island text1.6168822.613726.8242Neighbours11BLASTN+734834.gbk
386693289209925168Island text1.7257821.178720.4207Neighbours11BLASTN+IslandViewer 866932.gbk
495152797635724831Island text1.5933817.312112.0843Neighbours11BLASTN+IslandViewer 951527.gbk
51015557104522129665Island text1.6037919.249918.8764Neighbours11BLASTN+IslandViewer 1015557.gbk
61196616*122450027885Island text1.6571819.318127.7433Neighbours11BLASTN1196616.gbk