Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010508: Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence

NCBI: NC_010508

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia cenocepacia MC0-3 was isolated from soil associated with maize roots. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1451184*47649825315Island text2.1059925.863317.7282Neighbours11BLASTNIslandViewer 451184.gbk
2809974*84542135448Island text2.4006228.152325.6541Neighbours11BLASTN+IslandViewer 809974.gbk
393386296238928528Island text1.6703821.777422.744Neighbours11BLASTN+IslandViewer 933862.gbk
4981377*100519623820Island text1.9394620.779723.0488Neighbours11BLASTN+IslandViewer 981377.gbk
51206498*122498518488Island text1.5091818.737824.8477Neighbours11BLASTN+IslandViewer 1206498.gbk
61705500*172769222193Island text1.7678321.537922.3312Neighbours11BLASTN+IslandViewer 1705500.gbk
71865602188921923618Island text1.5449218.452115.0262Neighbours11BLASTN+IslandViewer 1865602.gbk
81898547192485126305Island text1.5170117.6114.9166Neighbours11BLASTN+IslandViewer 1898547.gbk
91980689200677326085Island text2.0858823.740718.3425Neighbours11BLASTN+1980689.gbk
102776283280459928317Island text2.2278324.182118.8005Neighbours11BLASTN+IslandViewer 2776283.gbk