Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010506: Shewanella woodyi ATCC 51908, complete genome

NCBI: NC_010506

Host Lineage: Shewanella woodyi; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This luminous species was isolated from squid ink and seawater from depths of 200 to 300 m in the Alboran Sea. This respiratory (nonfermentive) organism is able to use nitrate or nitrite as a terminal electron acceptor. This organism is motile via a single polar flagellum.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153783356188024048Island text1.4315934.903944.8167Neighbours120BLASTN537833.gbk
260200063909937100Island text1.5117858.207739.9045602000.gbk
377445579420919755Island text1.510636.427951.4923Neighbours120BLASTN+774455.gbk
41835910185951123602Island text2.4689531.812424.4183Neighbours21BLASTN1835910.gbk
51893000191272919730Island text1.5724431.523626.812Neighbours21BLASTN1893000.gbk
62046000*208082534826Island text2.5588134.632828.6136Neighbours21BLASTN2046000.gbk
72146444*217391127468Island text2.5102434.241229.9242Neighbours21BLASTN+2146444.gbk
82441944*246478422841Island text2.0397732.760229.5049Neighbours21+2441944.gbk
93585533360594920417Island text1.6302530.723137.7025Neighbours21BLASTNIslandViewer 3585533.gbk
104404377*442416819792Island text1.5192231.988752.4455Neighbours21BLASTN+4404377.gbk
114873487489643822952Island text2.322131.510837.0003Neighbours21BLASTN+4873487.gbk
124951500497315021651Island text1.5653331.773943.1815Neighbours21BLASTN+4951500.gbk
135155951517924523295Island text1.5426131.122326.2273Neighbours21BLASTN+5155951.gbk
145195000521688621887Island text1.6951832.401847.8728Neighbours21BLASTN+5195000.gbk