Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010505: Methylobacterium radiotolerans JCM 2831, complete genome

NCBI: NC_010505

Host Lineage: Methylobacterium radiotolerans; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This methylotrophic species nodulates and fixes nitrogen in symbiosis with legumes. Methylobacterium represents a branch of the Rhizobia which grow facultatively on methanol.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
140095042537624427Island text1.9723114.050911.2797Neighbours11BLASTN+IslandViewer 400950.gbk
21205747*122904923303Island text1.823312.980621.6613Neighbours11BLASTN+IslandViewer 1205747.gbk
31264758129672831971Island text5.4072431.585227.7155Neighbours11BLASTN+IslandViewer 1264758.gbk
41581429*160710125673Island text4.101818.5416.2608Neighbours11BLASTN+1581429.gbk
52103887213081426928Island text2.216716.59116.8672Neighbours11BLASTN+IslandViewer 2103887.gbk
62530476*255573425259Island text3.5926617.881516.7247Neighbours11BLASTN2530476.gbk
72657683268177424092Island text1.9031516.443214.6283Neighbours11BLASTN+IslandViewer 2657683.gbk
82690939272152230584Island text1.7756114.942613.2893Neighbours11BLASTN+IslandViewer 2690939.gbk
93376322340791331592Island text1.9243317.874121.1823Neighbours11BLASTN+3376322.gbk
103690000*371512225123Island text3.1284717.273118.9398Neighbours11BLASTN+3690000.gbk
114396800441651819719Island text2.8051413.114112.6568Neighbours11BLASTNIslandViewer 4396800.gbk
124676403*470458628184Island text3.4257117.564417.835Neighbours11BLASTN+4676403.gbk
134820000*485884138842Island text1.5449914.858718.4103Neighbours11BLASTNIslandViewer 4820000.gbk
144990472502043129960Island text2.1060315.025411.9813Neighbours11BLASTN+IslandViewer 4990472.gbk
155035668506954133874Island text2.2904116.025912.7077Neighbours11BLASTN+IslandViewer 5035668.gbk
165077162511633639175Island text1.6163214.615213.5902Neighbours11BLASTN+IslandViewer 5077162.gbk
175496170*552318327014Island text2.6276217.997116.7608Neighbours11BLASTN+IslandViewer 5496170.gbk
185525461557227846818Island text1.6982614.057412.5291Neighbours11BLASTN+IslandViewer 5525461.gbk
195583000560420421205Island text1.5460513.306114.4306Neighbours11BLASTNIslandViewer 5583000.gbk
205967324*599213424811Island text1.447713.314712.2975Neighbours11BLASTN+IslandViewer 5967324.gbk