Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010503: Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete

NCBI: NC_010503

Host Lineage: Ureaplasma parvum; Ureaplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This organism (Ureaplasma urealyticum biovar 1) is normally found as a commensal organism in the human genital tract. As an opportunistic pathogen, it can cause a sexually-transmitted disease and is recognized as causing non-chlamydial non-gonococcal urethritis. It can also cause obstetric complications in pregnant women, severe infections in infants, as well as meningitis. Like other Mollicutes, it is a wall-less bacterium and has undergone marked genome reduction. This organism appears to generate ATP through the hydrolysis of urea by the urease enzyme.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1400006335523356Island text1.5459312.205121.1171Neighbours21BLASTN40000.gbk
2138364*16380225439Island text2.9416218.156827.774Neighbours21BLASTN138364.gbk
3267924*29740229479Island text1.8290317.432125.0109Neighbours21BLASTN267924.gbk
4327517*36468137165Island text3.3551218.412328.0176Neighbours21BLASTN327517.gbk
555865157659917949Island text1.6601212.211222.7677Neighbours21BLASTN558651.gbk
6643432*66408220651Island text1.5663716.31224.9893Neighbours21BLASTN643432.gbk