Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010483: Thermotoga sp. RQ2, complete genome

NCBI: NC_010483

Host Lineage: Thermotoga; Thermotoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Thermotoga sp. RQ2, a hyperthermophilic bacterium was isolated from the geothermally heated seafloor in the Azores.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127308030370530626Island text2.1180931.514319.1973Neighbours21BLASTNIslandViewer 273080.gbk
236352538629422770Island text1.4133628.240540.6079Neighbours317BLASTN+363525.gbk
364257766283620260Island text1.5791127.914629.944Neighbours317BLASTN+642577.gbk
41385000*141466329664Island text1.8048125.669944.1505Neighbours317BLASTN1385000.gbk
51441614*146420022587Island text1.4846123.759742.0575Neighbours317BLASTN+1441614.gbk
61467616*148614918534Island text1.4511224.2443.769Neighbours317BLASTN1467616.gbk