Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010482: Candidatus Korarchaeum cryptofilum OPF8, complete genome

NCBI: NC_010482

Host Lineage: Korarchaeum cryptofilum; Korarchaeum; ; ; Korarchaeota; Archaea

General Information: This is a hyperthermophilic archaeon which has not yet been isolated in pure culture. Obsidian Pool, Yellowstone National Park. Isolated terrestrial and marine thermal environments.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
170100072607725078Island text1.698927.808324.0944Neighbours379BLASTN+IslandViewer 701000.gbk
284160986409922491Island text1.4540527.650823.6874Neighbours379+IslandViewer 841609.gbk
31540011*156259922589Island text1.8946825.313446.0945Neighbours379BLASTN+1540011.gbk