Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010471: Leuconostoc citreum KM20, complete genome

NCBI: NC_010471

Host Lineage: Leuconostoc citreum; Leuconostoc; Leuconostocaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Used for fermentation of cabbage into kimchi. Leuconostoc citreum is used in the lactic fermentation of cabbage, radishes and cucumbers into kimchi, a traditional Korean dish. Carbon dioxide produced by Leuconostoc bacteria replaces the air and creates an anaerobic atmosphere favorable for the stabilization of ascorbic acid and for preservation of the natural flavors of the vegetables. Leuconostoc citreum produces a characteristic yellow pigment, which can also aid in its identification.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11081590*110117319584Island text1.5055625.474238.0741Neighbours21BLASTN+IslandViewer 1081590.gbk