Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010424: Candidatus Desulforudis audaxviator MP104C, complete genome

NCBI: NC_010424

Host Lineage: Desulforudis audaxviator; Desulforudis; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Its genome indicates a motile, sporulating, sulfate-reducing, chemoautotrophic thermophile that can fix its own nitrogen and carbon by using machinery shared with archaea. Candidatus Desulforudis audaxviator is a gram positive sulfate reducing bacteria identified in fracture water from a borehole at a depth of 2.8 km in a South African gold mine. Water from these boreholes is very old (low-biodiversity fracture water), suggesting that these bacteria have been isolated from the Earth's surface for as much as several million years.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114657*4330928653Island text1.8000834.170123.2038Neighbours33BLASTN14657.gbk
2214640*23931224673Island text2.1914634.677727.8914Neighbours33BLASTN+214640.gbk
342202944859926571Island text1.7670934.072231.3513Neighbours33BLASTN+IslandViewer 422029.gbk
444886547047921615Island text1.5170630.114830.2534Neighbours33BLASTN+448865.gbk
5531727*55409922373Island text1.6731327.048928.1764Neighbours11BLASTN+IslandViewer 531727.gbk
669718777730380117Island text2.0483529.570431.1072Neighbours33BLASTN+IslandViewer 697187.gbk
782511784664421528Island text2.0319728.355423.3514Neighbours33BLASTN+IslandViewer 825117.gbk
81356000137741721418Island text1.6710630.176939.6586Neighbours11BLASTNIslandViewer 1356000.gbk
91563033*159550932477Island text2.612541.445638.199Neighbours316BLASTN+IslandViewer 1563033.gbk
101778459180631227854Island text2.940937.796444.993Neighbours316BLASTNIslandViewer 1778459.gbk
111857062188072023659Island text2.3957431.963840.6783Neighbours11BLASTNIslandViewer 1857062.gbk