Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010410: Acinetobacter baumannii AYE, complete genome

NCBI: NC_010410

Host Lineage: Acinetobacter baumannii; Acinetobacter; Moraxellaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain is responsible for community-acquired infections and is highly resistant to antibiotics. This bacterium is commonly isolated from the hospital environment and hospitalized patients. It is an aquatic organism, and is often cultured from liquid medical samples such as respiratory secretions, wounds, and urine. Acinetobacter also colonizes irrigating solutions and intravenous solutions. Although it has low virulence, it is capable of causing infection. Most isolates recovered from patients represent colonization rather than infection. When infections do occur, they usually occur in the blood, or in organs with a high fluid content, such as the lungs or urinary tract. Infections by this organism are becoming increasingly problematic due to the high number of resistance genes found in clinical isolates. Some strains are now resistant to all known antibiotics. Most of these genes appear to have been transferred horizontally from other organisms.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111201*3349022290Island text3.0259732.515449.5873Neighbours21BLASTN11201.gbk
2480518*50439423877Island text2.7246230.39646.2917Neighbours21BLASTN480518.gbk
3513298*53589122594Island text2.4844431.918248.7385Neighbours21BLASTN+513298.gbk
43166279*319220225924Island text2.3903334.974948.5702Neighbours21BLASTN3166279.gbk
53606826369540988584Island text4.0848153.26622.5901Neighbours11BLASTN+IslandViewer 3606826.gbk
63719599*374575226154Island text2.2949732.469246.7987Neighbours21BLASTN+3719599.gbk
73777076*379836021285Island text1.5327129.044131.102Neighbours21BLASTN+3777076.gbk
83886500*390459918100Island text1.6627925.875532.9212Neighbours21BLASTN+3886500.gbk