Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010397: Mycobacterium abscessus chromosome Chromosome, complete sequence

NCBI: NC_010397

Host Lineage: Mycobacterium abscessus; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium abscessus, formerly Mycobacterium chelonae subsp. abscessus, is a rapid-growing Mycobacterium sp., commonly isolated from soil and water. This organism causes a chronic lung infection, similar to tuberculosis, in patients with cystic fibrosis. Mycobacterium abscessus also causes wound and ear infections, and in immunosuppressed patients causes a generalized skin infection. This organism is very resistant to many commonly used antibiotics, which makes treatment difficult.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123597625991123936Island text1.6473719.546438.202Neighbours11BLASTN+IslandViewer 235976.gbk
281554984067525127Island text1.7870421.964830.7477Neighbours11BLASTNIslandViewer 815549.gbk
31099312*112264723336Island text1.5332323.417420.2763Neighbours11BLASTN1099312.gbk
41751067180111350047Island text1.8212126.155331.8547Neighbours11BLASTN+IslandViewer 1751067.gbk
51802724184373441011Island text1.6607622.764918.0342Neighbours11BLASTN+IslandViewer 1802724.gbk
62063561208701523455Island text1.5341322.010818.1515Neighbours11BLASTN2063561.gbk
74150596*418195931364Island text1.5015321.735234.0967Neighbours11BLASTN4150596.gbk
84387500440592818429Island text1.5153918.756121.0074Neighbours11BLASTN+4387500.gbk
94533089*455383820750Island text1.5666425.00128.0647Neighbours11BLASTNIslandViewer 4533089.gbk
104909957494210432148Island text1.5531920.924422.6717Neighbours11BLASTN+IslandViewer 4909957.gbk