Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010376: Finegoldia magna ATCC 29328, complete genome

NCBI: NC_010376

Host Lineage: Finegoldia magna; Finegoldia; Clostridiales Family XI; Clostridiales; Firmicutes; Bacteria

General Information: It is isolated most frequently from various infection sites, including soft tissue, bone and joint, and diabetic foot infections. This species, formerly Peptostreptococcus magnus, is a commensal bacterium colonizing human skin and mucous membranes. It has been shown to cause valve endocarditic in humans. Gram-positive anaerobic cocci (GPAC) are a major part of the normal human flora colonizing skin and mucous membranes of the mouth and gastrointestinal tracts. In GPAC, Finegoldia magna (formerly Peptostreptococcus magnus) has the highest pathogenicity and is isolated most frequently from various infection sites, including soft tissue, bone and joint, and diabetic foot infections.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1288124751518704Island text3.164821.26738.8659Neighbours21BLASTN28812.gbk
2491857883629652Island text3.3135122.852444.9405Neighbours21+49185.gbk
3186510*24309956590Island text3.6096124.626345.5281Neighbours21BLASTN+186510.gbk
4606000*62469418695Island text5.1052523.312344.4899Neighbours21BLASTN+606000.gbk
51175916*119913223217Island text4.7102426.09946.35Neighbours21BLASTN1175916.gbk
61433247*147809944853Island text3.5550625.736643.8826Neighbours21BLASTN+1433247.gbk
71711182173290321722Island text2.6319522.788341.0487Neighbours21BLASTN+1711182.gbk
81742752176399021239Island text2.3412121.177339.7572Neighbours21BLASTN+1742752.gbk