Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010366: Halobacterium salinarum R1 plasmid PHS1, complete sequence

NCBI: NC_010366

Host Lineage: Halobacterium salinarum; Halobacterium; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Chemoheterotrophic obligate extreme halophilic archeon. Halobacterial species are obligately halophilic microorganisms that have adapted to optimal growth under conditions of extremely high salinity 10 times that of sea water. This bacterium (strain R1; DSM 671) is an obligately halophilic archeon and represents the type species for the genus Halobacterium. The first recorded isolation of this organism came from the spoilage of salted fish. It is also commonly found in neutral salt lakes, marine salterns, proteinaceous products heavily salted with crude solar salt and ancient evaporate deposits.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111243112431Island text1.8836132.144836.2119Neighbours12BLASTN+1.gbk