Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010364: Halobacterium salinarum R1, complete genome

NCBI: NC_010364

Host Lineage: Halobacterium salinarum; Halobacterium; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Chemoheterotrophic obligate extreme halophilic archeon. Halobacterial species are obligately halophilic microorganisms that have adapted to optimal growth under conditions of extremely high salinity 10 times that of sea water. This bacterium (strain R1; DSM 671) is an obligately halophilic archeon and represents the type species for the genus Halobacterium. The first recorded isolation of this organism came from the spoilage of salted fish. It is also commonly found in neutral salt lakes, marine salterns, proteinaceous products heavily salted with crude solar salt and ancient evaporate deposits.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133227888275561Island text3.8230432.853323.9286Neighbours11BLASTN+IslandViewer 3322.gbk
284900*10809923200Island text2.0080924.705535.7413Neighbours11BLASTN+IslandViewer 84900.gbk
3733558*76240228845Island text3.5745530.346623.6544Neighbours11BLASTN+IslandViewer 733558.gbk
478776681663528870Island text2.8951824.699519.3186Neighbours11BLASTN+IslandViewer 787766.gbk
51215489*123640920921Island text2.4720621.538322.3379Neighbours11BLASTN1215489.gbk