Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010338: Caulobacter sp. K31, complete genome

NCBI: NC_010338

Host Lineage: Caulobacter; Caulobacter; Caulobacteraceae; Caulobacterales; Proteobacteria; Bacteria

General Information: Caulobacter strain K31 was isolated in an enrichment culture for chlorophenol-tolerant bacteria in groundwater from Karkola, Finland, which percolates through nutrient-poor silt and clay, and is cold (7-8oC), oxygen-deficient, iron-rich, and mildly acidic (pH 6-6.5).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1359940*38393423995Island text1.7112118.755121.9652Neighbours11BLASTN+IslandViewer 359940.gbk
2426388*45015723770Island text2.1041527.524519.7447Neighbours11BLASTNIslandViewer 426388.gbk
358800061124723248Island text1.418317.327316.8352Neighbours11BLASTN+IslandViewer 588000.gbk
465005467814628093Island text2.3241126.984621.4457Neighbours11BLASTN+IslandViewer 650054.gbk
51216385*124125324869Island text2.0711525.553724.7472Neighbours11BLASTN+IslandViewer 1216385.gbk
61394550*141650721958Island text1.5153918.97516.3276Neighbours11BLASTN+IslandViewer 1394550.gbk
72136193*215721821026Island text1.523318.148120.1486Neighbours11BLASTN+IslandViewer 2136193.gbk
82443765*246613122367Island text1.6630217.89115.6571Neighbours11BLASTN+IslandViewer 2443765.gbk
93743000*380073857739Island text2.6421427.49231.8623Neighbours11BLASTN+IslandViewer 3743000.gbk
104015928*404982733900Island text4.0745129.152129.7637Neighbours11BLASTN+4015928.gbk
114108280413892530646Island text1.7369222.018118.383Neighbours11BLASTN+IslandViewer 4108280.gbk
124148667417175123085Island text1.6839423.005818.371Neighbours11BLASTNIslandViewer 4148667.gbk
134481356*450312821773Island text2.0275720.128115.2462Neighbours11BLASTN+IslandViewer 4481356.gbk
144530403*455419223790Island text1.6365720.343421.6845Neighbours11BLASTN+IslandViewer 4530403.gbk