Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010337: Heliobacterium modesticaldum Ice1, complete genome

NCBI: NC_010337

Host Lineage: Heliobacterium modesticaldum; Heliobacterium; Heliobacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Heliobacterium modesticaldum strain Ice1, the type strain of this species, was isolated from Icelandic hot spring volcanic soils. It grows optimally above 50 degrees Celsius, grows best photoheterotrophically, but can grow in the dark chemotrophically on pyruvate. Phototrophic thermophile. This organism is an anoxygenic phototroph isolated from hot spring microbial mats and volcanic soil. Cell wall structure, the ability to form endospores, and 16S ribosomal RNA analysis place Heliobacterium modesticaldum in a family of phototrophic bacteria related to the Clostridia. Heliobacterium modesticaldum is able to fix nitrogen and may contribute significantly to the nitrogen availability in microbial mats.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*4268242682Island text1.8282332.720437.2206Neighbours33BLASTN+IslandViewer 1.gbk
298974*12939030417Island text4.1264849.788930.1266Neighbours31BLASTN+IslandViewer 98974.gbk
314766418515037487Island text2.2383639.625930.5562Neighbours33BLASTN+IslandViewer 147664.gbk
4524605*54468120077Island text1.6482933.517834.1272Neighbours33BLASTN+524605.gbk
5565730*58815822429Island text1.8841229.720954.757Neighbours33BLASTN565730.gbk
659126461191220649Island text1.705534.443633.2288Neighbours31BLASTN+IslandViewer 591264.gbk
761630464593229629Island text2.4795646.396433.2477Neighbours31BLASTNIslandViewer 616304.gbk
874846777224923783Island text1.8453135.926428.234Neighbours11BLASTN+IslandViewer 748467.gbk
980374885207048323Island text3.7825448.934429.9244Neighbours31BLASTN+IslandViewer 803748.gbk
101051425*107871227288Island text2.4948745.204727.7741Neighbours33BLASTN+IslandViewer 1051425.gbk
111188373*121235323981Island text1.8833534.545229.2545Neighbours11BLASTNIslandViewer 1188373.gbk
121445512146809922588Island text2.2601938.432228.576Neighbours11BLASTN+1445512.gbk
131561430159277731348Island text2.382641.150526.1438Neighbours31BLASTN+IslandViewer 1561430.gbk
141999405202306023656Island text1.6262831.392935.6438Neighbours11BLASTNIslandViewer 1999405.gbk
152339056*235710618051Island text1.9292532.310950.7614Neighbours33BLASTNIslandViewer 2339056.gbk
162793667*283013736471Island text3.1431950.150230.0873Neighbours31BLASTN+IslandViewer 2793667.gbk
172848360*289710148742Island text2.9033248.860534.017Neighbours31BLASTN+IslandViewer 2848360.gbk
182950500*297409923600Island text2.2017437.15345.6694Neighbours11BLASTN+2950500.gbk