Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010336: Francisella philomiragia subsp. philomiragia ATCC 25017, complete

NCBI: NC_010336

Host Lineage: Francisella philomiragia; Francisella; Francisellaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: Francisella philomiragia subsp. philomiragia ATCC 25017 was isolated from water in the Bear River Refuge in Utah, USA. Causes disease in humans and fish. Francisella philomiragia, formerly Yersinia philomiragia, has been isolated from water, muskrats, fish and humans. F. philomiragia is able to cause an often fatal bacteremia in people with chronic granulomatous disease. This supspecies can also cause pneumonia in near-drowning victims.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1213148*25031237165Island text1.5384317.095127.8165Neighbours21BLASTN+IslandViewer 213148.gbk
256495858753122574Island text2.0271617.563931.5946Neighbours21BLASTN+564958.gbk
3607145*62584218698Island text1.5203516.941326.9704Neighbours21BLASTN+607145.gbk
4733751*75293719187Island text1.5278316.579526.4466Neighbours21BLASTN+IslandViewer 733751.gbk
585291587830125387Island text1.4829718.14223.7605Neighbours21BLASTN+852915.gbk
6996661*105214055480Island text1.8876617.97129.6772Neighbours21BLASTN+996661.gbk
71117325*114783030506Island text1.7021819.145433.0042Neighbours21BLASTN+1117325.gbk
81248071127803629966Island text2.0289217.729830.3494Neighbours21BLASTN+IslandViewer 1248071.gbk
91282265130823525971Island text1.655718.071629.2994Neighbours21BLASTN+IslandViewer 1282265.gbk
101335558135862223065Island text1.4892918.488624.5645Neighbours21BLASTN1335558.gbk
111468760*149027221513Island text1.5164916.327224.2234Neighbours21BLASTN1468760.gbk
121670000169101521016Island text1.5146917.353727.4729Neighbours21BLASTN+1670000.gbk