Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010321: Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, complete

NCBI: NC_010321

Host Lineage: Thermoanaerobacter pseudethanolicus; Thermoanaerobacter; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Thermoanaerobacter ethanolicus was isolated from a hot spring microbial mat in Yellowstone National Park. It is a thermophilic anaerobic bacterium, which ferments a wide range of hexose and pentose sugars, as well as starch and pullulan, to ethanol.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135855*5876122907Island text2.1289421.656138.1593Neighbours21BLASTN+IslandViewer 35855.gbk
224437127058026210Island text1.8350821.34339.0242Neighbours21BLASTN+244371.gbk
3393000*41871225713Island text2.5530422.558644.5058Neighbours21BLASTN393000.gbk
4429720*45101321294Island text3.1771925.046546.8561Neighbours344BLASTN+429720.gbk
556249458235019857Island text1.9060922.124341.96Neighbours21BLASTN562494.gbk
6947233*97594328711Island text1.9686326.88237.4443Neighbours21BLASTN+IslandViewer 947233.gbk
71177238119641319176Island text1.497823.176136.3016Neighbours21BLASTNIslandViewer 1177238.gbk
81361748*138744325696Island text3.3404736.012247.3996Neighbours21BLASTN+1361748.gbk
91616362164339127030Island text1.8571520.181833.8105Neighbours21BLASTN1616362.gbk
101703000*172661423615Island text2.3617229.902440.5951Neighbours21BLASTN+IslandViewer 1703000.gbk
112207364*223059923236Island text2.4718127.199649.6832Neighbours21BLASTN2207364.gbk
122256758227559318836Island text3.2216128.0147.3306Neighbours344BLASTN2256758.gbk
132276000*229845022451Island text2.2924420.975542.8138Neighbours21BLASTN+IslandViewer 2276000.gbk
142319820*234509925280Island text2.0639129.113838.2263Neighbours21BLASTN+IslandViewer 2319820.gbk