Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010320: Thermoanaerobacter sp. X514 chromosome, complete genome

NCBI: NC_010320

Host Lineage: Thermoanaerobacter; Thermoanaerobacter; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: This strain was isolated by anaerobic enrichment culture from a deep subsurface sample (2000 m below the surface) taken from a core hole at the Piceance Basin, Colorado, USA. It can use a variety of electron donors, including glucose, acetate, hydrogen and xylose while reducing iron, chromium and uranium at 60 degrees C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133814*5513121318Island text2.9622729.512754.5054Neighbours344BLASTN33814.gbk
2143109*16647323365Island text2.3306319.497838.8659Neighbours21BLASTN+IslandViewer 143109.gbk
3671699*69505323355Island text1.4649522.822220.4746Neighbours21BLASTN+671699.gbk
4819326*84252023195Island text1.6923619.260743.3122Neighbours21BLASTN819326.gbk
5881351*91326431914Island text2.4211521.956446.0899Neighbours21BLASTN881351.gbk
6918532*93509916568Island text3.0834425.935149.7249Neighbours344BLASTN+918532.gbk
71268355*131860650252Island text2.1254626.552139.1696Neighbours21BLASTN+IslandViewer 1268355.gbk
81585974160409918126Island text1.4868722.112135.5403Neighbours21BLASTNIslandViewer 1585974.gbk
91769486*179196822483Island text2.8373630.781439.4151Neighbours21BLASTN+1769486.gbk
101805818*182930623489Island text3.3392933.142749.7184Neighbours21BLASTN1805818.gbk
111860801*188498424184Island text2.0426324.309338.9742Neighbours21BLASTN+IslandViewer 1860801.gbk
121949852197022420373Island text3.944422.005747.0094Neighbours21BLASTN+IslandViewer 1949852.gbk
132397395242467827284Island text2.6170227.058342.27Neighbours21BLASTN+IslandViewer 2397395.gbk