Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010296: Microcystis aeruginosa NIES-843, complete genome

NCBI: NC_010296

Host Lineage: Microcystis aeruginosa; Microcystis; Microcystaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: Toxic bloom-forming cyanobacterium. Microcystis aeruginosa is a common cyanobacterium which can form blooms from late summer to early autumn in nutrient-rich lakes, ponds, and reservoirs. This organism produces a hepatotoxin, microcystin, which can kill fish, birds, and farm animals. This toxin also causes skin irritation and gastrointestinal symptoms in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1540007637922380Island text1.4463539.71335.9727Neighbours329BLASTN+IslandViewer 54000.gbk
21081728*110598524258Island text1.5950147.538642.3789BLASTN+1081728.gbk
31271393129022718835Island text1.4948734.44835.723Neighbours329BLASTN+1271393.gbk
42200054*221987519822Island text1.5257130.972430.8909Neighbours329BLASTN2200054.gbk
52695186271506019875Island text1.7017639.743432.8278Neighbours311BLASTN+IslandViewer 2695186.gbk
64384000*440609922100Island text1.4310737.688542.9407Neighbours329BLASTN+IslandViewer 4384000.gbk
75002428*502497722550Island text1.5830233.926842.8615Neighbours329BLASTN+5002428.gbk
85278081*529959821518Island text1.5680541.161545.3892Neighbours329BLASTN5278081.gbk
95484624550502320400Island text1.5396633.68840.7723Neighbours329BLASTN5484624.gbk
105557853558083022978Island text1.4344939.962333.6399Neighbours329BLASTN+IslandViewer 5557853.gbk