Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010278: Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,

NCBI: NC_010278

Host Lineage: Actinobacillus pleuropneumoniae; Actinobacillus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: This organism is an obligate parasite of pigs. The bacterium colonizes and invades the porcine lower respiratory tract and can survive phagocytosis by macrophages, eventually resulting in the death of the macrophage cell. Three RTS toxins, which result in cell damage, are produced by this organism.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131594133855022610Island text1.6681430.301644.676Neighbours35BLASTN+IslandViewer 315941.gbk
2398521*42436925849Island text1.7820332.15147.5503Neighbours35BLASTN398521.gbk
386016588429224128Island text1.5000627.869621.1171Neighbours35BLASTN+IslandViewer 860165.gbk
41045884107909333210Island text1.3879225.820820.1182Neighbours21BLASTN+IslandViewer 1045884.gbk
51235934*125818622253Island text1.7846927.704117.5413BLASTN1235934.gbk
61467146*149077823633Island text1.7480629.739216.6258BLASTNIslandViewer 1467146.gbk
71625695*165783232138Island text2.0157824.129417.0998BLASTNIslandViewer 1625695.gbk
81749579176932719749Island text1.5429527.39318.2531Neighbours21BLASTN+IslandViewer 1749579.gbk
91918000*194630928310Island text1.6226830.92443.6586Neighbours330BLASTN1918000.gbk
101989500*200889019391Island text3.4720429.698615.0728Neighbours35BLASTN+IslandViewer 1989500.gbk