Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010175: Chloroflexus aurantiacus J-10-fl, complete genome

NCBI: NC_010175

Host Lineage: Chloroflexus aurantiacus; Chloroflexus; Chloroflexaceae; Chloroflexales; Chloroflexi; Bacteria

General Information: Chloroflexus aurantiacus J-10-fl (DSM 635) was isolated from the Hakone hot spring area in Japan. This organism is one of the deepest branching phototrophs, and has some characteristics of both green non-sulfur and purple photosynthetic bacteria. These thermophiles live in hot springs of neutral to high pH and grow in mats, typically as the lowest layer in the mat with cyanobacteria above them, or as filamentous tendrils. The bacterium grows as a photoheterotroph and consumes the organic products the cyanobacteria produce, although it can also be photoautotrophic under anaerobic conditions and chemoorganotrophic under aerobic conditions. Like other green sulfur bacteria, the light-harvesting apparatus exists in chlorosomes, which consists of reaction centers surround by a protein-stabilized glycolipid monolayer, at the inner surface of the cytoplasmic membrane, although the reaction centers are more similar to the type II systems found in cyanobacteria than the type I systems found in green-sulfur bacteria. The multicellular filaments this organism produces are capable of gliding motility.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
139845342450326051Island text1.8768833.719235.5484Neighbours55BLASTN+398453.gbk
2448020*47419226173Island text2.4155538.705944.1571Neighbours55BLASTN+IslandViewer 448020.gbk
31531212155433423123Island text1.4663927.042833.0978Neighbours55+1531212.gbk
41603500162298619487Island text1.5002533.505637.6599Neighbours55BLASTN+1603500.gbk
51825878185558029703Island text2.3717941.519637.1485Neighbours55BLASTNIslandViewer 1825878.gbk
62062932*208922326292Island text1.7298335.899434.4264Neighbours55BLASTNIslandViewer 2062932.gbk
72488000251132323324Island text1.4484434.259535.589Neighbours11BLASTN2488000.gbk
82925084294710722024Island text1.4938527.724335.214Neighbours11BLASTN2925084.gbk
93115021313880023780Island text1.6435644.275935.6688Neighbours11BLASTN+IslandViewer 3115021.gbk
103287500*330660919110Island text1.6813528.625135.2012Neighbours11BLASTN+3287500.gbk
113712456373609923644Island text1.3925132.271432.507Neighbours11BLASTN+3712456.gbk
124375265439343718173Island text1.4848530.836639.14Neighbours55BLASTN4375265.gbk