Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010172: Methylobacterium extorquens PA1, complete genome

NCBI: NC_010172

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Methylobacterium chloromethanicum was isolated from soil at a petrochemical factory in Tatarstan, Russia. This organism is able to grow using chloromethane as the sole carbon and energy source.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1312645113119868Island text2.1366417.246815.548Neighbours11BLASTN31264.gbk
25750011716259663Island text1.9172520.908415.9035Neighbours11BLASTN+IslandViewer 57500.gbk
3280092*30984029749Island text2.7108821.311818.5611Neighbours11BLASTNIslandViewer 280092.gbk
4480000*53036650367Island text1.527818.594815.0936Neighbours11BLASTN+IslandViewer 480000.gbk
557304660029627251Island text1.8962221.530715.0326Neighbours11BLASTN+573046.gbk
6632180*65846326284Island text2.8920722.044123.6474Neighbours11BLASTN+632180.gbk
7798923*88030381381Island text1.9596420.293313.551NeighboursBLASTN+IslandViewer 798923.gbk
81079127*112780848682Island text2.9131222.716220.8869Neighbours11BLASTN1079127.gbk
91199725121859918875Island text1.7008417.470215.9155Neighbours11BLASTN+1199725.gbk
101222150124149019341Island text1.4925218.810815.952Neighbours11BLASTN+1222150.gbk
111522707*154772725021Island text2.9970324.060724.9142Neighbours11BLASTN1522707.gbk
122082000209959917600Island text1.8499116.974715.1602Neighbours11BLASTN+IslandViewer 2082000.gbk
132722000*274449822499Island text1.5248417.436815.3125Neighbours11BLASTN2722000.gbk
143413392*343676823377Island text2.4358823.596217.1641Neighbours11BLASTN+IslandViewer 3413392.gbk
153712000373446522466Island text1.6694319.416714.8206Neighbours11BLASTN+3712000.gbk
163894652393647541824Island text2.3291519.717316.4297Neighbours11BLASTN+IslandViewer 3894652.gbk
173946644*397036123718Island text2.3704317.281717.7671Neighbours11BLASTNIslandViewer 3946644.gbk
184064087*410309939013Island text3.634125.472218.6794Neighbours11BLASTN+IslandViewer 4064087.gbk
194185904*422075034847Island text4.0502530.408625.9199Neighbours11BLASTN+IslandViewer 4185904.gbk
205036385*505523318849Island text2.4846916.745721.7871Neighbours11BLASTN5036385.gbk
215447189*548599938811Island text3.3702425.006818.1186Neighbours11BLASTN+IslandViewer 5447189.gbk