Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010170: Bordetella petrii, complete genome

NCBI: NC_010170

Host Lineage: Bordetella petrii; Bordetella; Alcaligenaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Bordetella petrii strain DSM12804 was initially isolated from river sediment. Unlike other members of the genus, this organism is not known to be associated with humans or other warm-blooded animals. Bordetella petrii also differs from other Bordetella species in that it is a facultative anaerobe.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120951423649426981Island text1.9573920.260817.1885Neighbours11BLASTN+IslandViewer 209514.gbk
21103224112440821185Island text1.553621.761916.4813Neighbours11BLASTN+IslandViewer 1103224.gbk
31152131117669424564Island text2.7007523.646221.0052Neighbours11BLASTN+IslandViewer 1152131.gbk
41219641124280523165Island text1.5222520.172715.0018Neighbours11BLASTN+IslandViewer 1219641.gbk
51324758*137344648689Island text1.7685820.990120.0457Neighbours11BLASTN+IslandViewer 1324758.gbk
61417615144165424040Island text1.6290220.432623.6417Neighbours11BLASTNIslandViewer 1417615.gbk
71470755*149000819254Island text1.8915421.172815.9114Neighbours11BLASTN+IslandViewer 1470755.gbk
81498253*154638148129Island text1.7631122.045221.177Neighbours11BLASTN+IslandViewer 1498253.gbk
91551923157259920677Island text2.0046221.689118.1316Neighbours11BLASTN+IslandViewer 1551923.gbk
101580832*159859917768Island text1.7635620.218314.5267Neighbours11BLASTN+IslandViewer 1580832.gbk
111661915*168523723323Island text1.4611520.555723.6448Neighbours11BLASTN1661915.gbk
122246993226783320841Island text1.6266520.988221.3627Neighbours11BLASTN+IslandViewer 2246993.gbk
132374852241026935418Island text3.2114231.685838.7317Neighbours11BLASTNIslandViewer 2374852.gbk
143908500*394194933450Island text1.9972425.572638.7254Neighbours11BLASTN+IslandViewer 3908500.gbk
153944228399478350556Island text1.9718920.691821.3592Neighbours11BLASTN+IslandViewer 3944228.gbk
164196197*422572429528Island text2.2463522.763727.5684Neighbours11BLASTN+IslandViewer 4196197.gbk
174409683443529725615Island text1.8723422.452825.0388Neighbours11BLASTN+IslandViewer 4409683.gbk
184463000451176948770Island text2.0904520.868325.4872Neighbours11BLASTN+IslandViewer 4463000.gbk
194533416*456674433329Island text2.0781223.795422.6442Neighbours11BLASTN+IslandViewer 4533416.gbk
204739925476955229628Island text2.2846527.763824.8589Neighbours11BLASTN+IslandViewer 4739925.gbk
214800000*4908823108824Island text2.7312727.101623.6481Neighbours11BLASTN+IslandViewer 4800000.gbk
225087742511517327432Island text2.6535328.808628.9055Neighbours11BLASTN+IslandViewer 5087742.gbk