Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010169: Brucella suis ATCC 23445 chromosome I, complete sequence

NCBI: NC_010169

Host Lineage: Brucella suis; Brucella; Brucellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This organism is a swine-specific Brucella. It causes infectious abortions in animals and a systemic, febrile (feverish) illness in humans. Human infection usually occurs by accidental contact with infected animals or by ingestion of contaminated food. Brucella suis is considered a potential bioterrorism agent and was the first pathogenic organism to be weaponized by the U.S. Military.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1261473*28238720915Island text1.5749431.634827.8579Neighbours11BLASTNIslandViewer 261473.gbk
2527500*55287125372Island text2.0370329.59129.6073Neighbours11BLASTN+IslandViewer 527500.gbk
372515274365118500Island text1.4392131.049423.3646Neighbours11BLASTN+IslandViewer 725152.gbk
4957565*98305325489Island text1.6696731.430426.2227Neighbours11BLASTN+IslandViewer 957565.gbk
51599936*162443724502Island text1.8734830.975438.7141Neighbours11BLASTN1599936.gbk
61739402*176262223221Island text2.0598735.966927.4907Neighbours11BLASTNIslandViewer 1739402.gbk