Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010167: Brucella suis ATCC 23445 chromosome II, complete sequence

NCBI: NC_010167

Host Lineage: Brucella suis; Brucella; Brucellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This organism is a swine-specific Brucella. It causes infectious abortions in animals and a systemic, febrile (feverish) illness in humans. Human infection usually occurs by accidental contact with infected animals or by ingestion of contaminated food. Brucella suis is considered a potential bioterrorism agent and was the first pathogenic organism to be weaponized by the USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11085106*110813423029Island text1.8086532.552739.9246Neighbours11BLASTNIslandViewer 1085106.gbk
21287000*131378426785Island text1.7550330.733235.8554NeighboursBLASTNIslandViewer 1287000.gbk