Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010163: Acholeplasma laidlawii PG-8A chromosome, complete genome

NCBI: NC_010163

Host Lineage: Acholeplasma laidlawii; Acholeplasma; Acholeplasmataceae; Acholeplasmatales; Tenericutes; Bacteria

General Information: Acholeplasma species are widely distributed in the nature and can be detected and isolated from different plant, avian, and mammalian sources. Acholeplasma laidlawii is found in soil, compost, wastewaters, cell cultures as well as in human tissues and in many animal species (birds, bovine, goat, equine, ovine, porcine, feline, rodent, primates). Acholeplasma laidlawii is capable of synthesizing glucose using a pyrophosphate-dependent 6-phosphofructokinase which has also been detected in other acholeplasmas (a good example of flexible metabolism). Additionally, Acholeplasma laidlawii and phytoplasmas are the only mollicutes known to use the universal genetic code, in which UGA is a stop codon.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163209*9114627938Island text4.8720924.354341.3176Neighbours21BLASTN63209.gbk
2145808*16812722320Island text1.522215.989828.1216Neighbours21BLASTN145808.gbk
3171148*19072019573Island text1.7981217.055830.3539Neighbours21BLASTN171148.gbk
4285710*30999324284Island text1.4974716.318127.3846Neighbours21BLASTN+285710.gbk
561463465994945316Island text1.8752317.388128.74Neighbours21BLASTN+IslandViewer 614634.gbk
61193237*121719423958Island text4.2627120.678734.854Neighbours21BLASTN+1193237.gbk
71361217138485623640Island text1.4477116.962525.9776Neighbours21BLASTN+1361217.gbk