Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010103: Brucella canis ATCC 23365 chromosome I, complete sequence

NCBI: NC_010103

Host Lineage: Brucella canis; Brucella; Brucellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Etiologic agent of canine brucellosis. They are highly infectious, and can be spread through contact with infected animal products or through the air, making them a potential bioterrorism agent. Once the organism has entered the body, it can become intracellular, and enter the blood and lymphatic regions, multiplying inside phagocytes before eventually causing bacteremia (spread of bacteria through the blood). Virulence may depend on a type IV secretion system which may promote intracellular growth by secreting important effector molecules. This bacterium is the causative agent of canine brucellosis. The main sources of infection are vaginal fluids of infected females and urine in males. The most significant symptoms are late abortions in bitches, epididymitis in males and infertility in both sexes, as well as generalized lymphadenitis, discospondylitis and uveitis. Human contagion is not frequent, although it has been reported, and is easily treated. B. canis can be differentiated from the other species of the genus Brucella (except B. ovis) in that it forms rugose colonies.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1507482*53233624855Island text2.0811328.938831.3282Neighbours11BLASTN+IslandViewer 507482.gbk
270487572309918225Island text1.497531.104121.379Neighbours11BLASTN+IslandViewer 704875.gbk
3936250*96173925490Island text1.6440830.484923.4855Neighbours11BLASTN+IslandViewer 936250.gbk
41577750*160141623667Island text1.8331830.795139.7374Neighbours11BLASTN1577750.gbk
51777000*180418827189Island text1.7670130.207636.6546Neighbours11BLASTN+IslandViewer 1777000.gbk
61920585*194591325329Island text2.0581334.971827.1072Neighbours41BLASTNIslandViewer 1920585.gbk