Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010087: Burkholderia multivorans ATCC 17616 chromosome 3, complete

NCBI: NC_010087

Host Lineage: Burkholderia multivorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This species is associated with infections in cystic fibrosis patients. It is an important opportunistic pathogen, colonizing the lungs and associated with a decrease in long-term survival. A minority of patients with this infection may also develop "cepacia syndrome", which leads to an acute clinical decline which is frequently fatal. This species is a member of the Burkholderia cepacia complex, although it does not appear to spread from patient to patient as do the other members of the group.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
126562529159925975Island text3.0288327.615339.3437Neighbours11BLASTN+IslandViewer 265625.gbk
231906336759948537Island text1.9413923.776119.2058Neighbours11BLASTN+IslandViewer 319063.gbk
3376918*44748870571Island text1.8141124.426815.3439Neighbours11BLASTN+IslandViewer 376918.gbk
446059149073730147Island text1.8434123.35919.589Neighbours11BLASTN+IslandViewer 460591.gbk