Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010086: Burkholderia multivorans ATCC 17616 chromosome 2, complete

NCBI: NC_010086

Host Lineage: Burkholderia multivorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This species is associated with infections in cystic fibrosis patients. It is an important opportunistic pathogen, colonizing the lungs and associated with a decrease in long-term survival. A minority of patients with this infection may also develop "cepacia syndrome", which leads to an acute clinical decline which is frequently fatal. This species is a member of the Burkholderia cepacia complex, although it does not appear to spread from patient to patient as do the other members of the group.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1208764627625401Island text2.0398829.520739.1835Neighbours11BLASTN+20876.gbk
281089083573124842Island text2.8754127.70632.0629Neighbours11BLASTN+IslandViewer 810890.gbk
387172390117629454Island text1.9414526.217420.6275Neighbours11BLASTN+IslandViewer 871723.gbk
41816378188976873391Island text2.2645532.948431.8976Neighbours11BLASTN+IslandViewer 1816378.gbk
51907959*194027532317Island text2.0154122.920617.7253Neighbours11BLASTN+IslandViewer 1907959.gbk