Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010085: Nitrosopumilus maritimus SCM1, complete genome

NCBI: NC_010085

Host Lineage: Nitrosopumilus maritimus; Nitrosopumilus; Nitrosopumilaceae; Nitrosopumilales; Thaumarchaeota; Archaea

General Information: Nitrosopumilus maritimus SCM1 was isolated from a salt-water aquarium. Nitrosopumilus maritimus is an autotrophic ammonia-oxidizing archaeon. This organism is able to fix carbon and oxidize ammonia. Autotrophic ammonia-oxidizing Archaea.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1351689*37470023012Island text1.5318418.269731.8614Neighbours21BLASTN351689.gbk
2702901*72438321483Island text1.9615319.886238.9352Neighbours21BLASTN702901.gbk
394591099259746688Island text1.5353826.496737.372BLASTN+945910.gbk
41090000*111514925150Island text1.4383627.231322.4632Neighbours21BLASTN1090000.gbk
51174917119361118695Island text1.7115218.1835.8935Neighbours21+1174917.gbk
61358772*137789519124Island text1.5115818.895917.9315Neighbours21BLASTN1358772.gbk