Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010084: Burkholderia multivorans ATCC 17616 chromosome 1, complete

NCBI: NC_010084

Host Lineage: Burkholderia multivorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Associated with infections in cystic fibrosis patients. This species is associated with infections in cystic fibrosis patients. It is an important opportunistic pathogen, colonizing the lungs and associated with a decrease in long-term survival. A minority of patients with this infection may also develop "cepacia syndrome", which leads to an acute clinical decline which is frequently fatal. This species is a member of the Burkholderia cepacia complex, although it does not appear to spread from patient to patient as do the other members of the group.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
13115*2413121017Island text1.5923622.166822.7482Neighbours11BLASTN+IslandViewer 3115.gbk
2534937*56716032224Island text3.0555729.663635.4595Neighbours11BLASTN+IslandViewer 534937.gbk
369581772257426758Island text2.8137226.756825.6814Neighbours11BLASTN+IslandViewer 695817.gbk
4988908101190522998Island text2.3002226.670628.1651Neighbours11BLASTN+IslandViewer 988908.gbk
51054000*107678122782Island text1.9451925.761229.8435Neighbours11BLASTN+IslandViewer 1054000.gbk
61299387*132240923023Island text1.3335218.585820.6298Neighbours11BLASTN+IslandViewer 1299387.gbk
72171881*219409922219Island text3.1416827.112936.9473Neighbours11BLASTN+IslandViewer 2171881.gbk
82484000253516251163Island text1.4388619.789617.6392Neighbours11BLASTN+IslandViewer 2484000.gbk
92674972*269779222821Island text1.5739117.619221.2632Neighbours11BLASTN+IslandViewer 2674972.gbk
102717443274359926157Island text1.9758625.964115.8897Neighbours11BLASTN+IslandViewer 2717443.gbk
112822295*285880536511Island text2.0226624.147315.5066Neighbours11BLASTN+IslandViewer 2822295.gbk
123051355*308132229968Island text1.7295419.931618.6825Neighbours11BLASTN+IslandViewer 3051355.gbk
133173757320332029564Island text4.0424939.016634.2136Neighbours11BLASTNIslandViewer 3173757.gbk