Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010080: Lactobacillus helveticus DPC 4571, complete genome

NCBI: NC_010080

Host Lineage: Lactobacillus helveticus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactic acid bacterium used in the manufacture of cheese. The homofermentative thermophilic lactic acid bacterium that is used in the manufacture of Swiss type and long-ripened Italian cheeses, such as Emmental, Grana, and Provolone cheeses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
169000*9485925860Island text2.5075228.273242.3202Neighbours21BLASTN+69000.gbk
2445398*46977024373Island text2.1776628.009344.0299Neighbours21BLASTN445398.gbk
31685280*170653121252Island text3.2357927.493645.5763Neighbours21BLASTN+1685280.gbk
41885677190476219086Island text1.5140425.924122.3413Neighbours21BLASTN+IslandViewer 1885677.gbk
51911932194663334702Island text1.6128525.933623.8677Neighbours21BLASTN+IslandViewer 1911932.gbk