Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010002: Delftia acidovorans SPH-1, complete genome

NCBI: NC_010002

Host Lineage: Delftia acidovorans; Delftia; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This species was isolated from soil enriched with acetamide in Delft in the Netherlands. It was originally classified as Comamonas acidivorans in 1926, and redescribed and characterized in 1999. This organism is found in soil, sediment, activated sludge, crude oil, water, and various clinical samples.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1528529*55003421506Island text1.5524121.656128.3363Neighbours11BLASTN+528529.gbk
266169668889327198Island text3.4166933.592627.3893Neighbours11BLASTNIslandViewer 661696.gbk
396002797932419298Island text1.7105219.902122.6763Neighbours11BLASTN960027.gbk
41145951*116748921539Island text1.5624723.745537.1625Neighbours11BLASTN+1145951.gbk
51447711146581518105Island text1.4894920.507122.0307Neighbours11BLASTN+1447711.gbk
61584500161170527206Island text3.3105236.455541.8456Neighbours11BLASTN+IslandViewer 1584500.gbk
71833923*185269118769Island text1.738120.480730.829Neighbours11BLASTNIslandViewer 1833923.gbk
81879220*196064881429Island text3.8682734.406724.5388Neighbours11BLASTN+IslandViewer 1879220.gbk
92110953*214874737795Island text1.8350823.447736.5566Neighbours11BLASTN+IslandViewer 2110953.gbk
102293670*231767724008Island text2.3587824.12640.5032Neighbours11BLASTN+2293670.gbk
112518599*254275024152Island text2.346123.291626.0329Neighbours11BLASTN+IslandViewer 2518599.gbk
122933909297250438596Island text2.3593225.571319.2318Neighbours11BLASTN+IslandViewer 2933909.gbk
133002354302560623253Island text2.1458723.342116.0347Neighbours11BLASTN+IslandViewer 3002354.gbk
143357752338379626045Island text2.886330.663728.4724Neighbours11BLASTN+IslandViewer 3357752.gbk
153399770341841218643Island text1.584920.355120.1273Neighbours11BLASTN+IslandViewer 3399770.gbk
163465509348894823440Island text3.021129.631835.8609Neighbours11BLASTN+IslandViewer 3465509.gbk
173509506354477335268Island text1.7074821.940521.4453Neighbours11BLASTN+IslandViewer 3509506.gbk
183547958356621218255Island text1.5041820.853624.4427Neighbours11BLASTN+3547958.gbk
193753000377388020881Island text1.9956721.497320.3305Neighbours11BLASTN+IslandViewer 3753000.gbk
203785313380809922787Island text1.6362521.212324.4975Neighbours11BLASTN+IslandViewer 3785313.gbk
213887926390943921514Island text2.1055121.62426.6983Neighbours11BLASTN+IslandViewer 3887926.gbk
223980832399913918308Island text2.1879220.032820.9465Neighbours11BLASTN+IslandViewer 3980832.gbk
234038500406476326264Island text2.8287230.416130.3441Neighbours11BLASTNIslandViewer 4038500.gbk
244073724409509921376Island text1.5337621.426522.4144Neighbours11BLASTN+IslandViewer 4073724.gbk
254175809*419921123403Island text1.4810121.79613.741Neighbours11BLASTNIslandViewer 4175809.gbk
264256651428631629666Island text3.1086132.161143.1344Neighbours11BLASTN+IslandViewer 4256651.gbk
274287439431469827260Island text2.3270629.605115.9004Neighbours11BLASTNIslandViewer 4287439.gbk
284326509435151425006Island text2.3654234.581725.9946Neighbours11BLASTN+IslandViewer 4326509.gbk
294508467453496626500Island text1.899922.615432.9713Neighbours11BLASTN+IslandViewer 4508467.gbk
304544818456374018923Island text1.5025322.507324.5036Neighbours11BLASTNIslandViewer 4544818.gbk
314572573*461858346011Island text2.6100233.045330.3988Neighbours11BLASTN+IslandViewer 4572573.gbk
324890192491000619815Island text1.8051320.42828.7885Neighbours11BLASTN+IslandViewer 4890192.gbk
334930865496620035336Island text2.4521624.397228.2799Neighbours114930865.gbk
345111665*513441222748Island text2.0007719.686324.394Neighbours11BLASTNIslandViewer 5111665.gbk
355143869516617722309Island text1.8452123.122434.1318Neighbours11BLASTN+5143869.gbk
365691968571687324906Island text1.4889524.124519.6126Neighbours11BLASTN+IslandViewer 5691968.gbk
375752363577667524313Island text1.6944621.039929.5444Neighbours11BLASTN5752363.gbk
386104500613350729008Island text1.8384424.887930.2185Neighbours11BLASTNIslandViewer 6104500.gbk
396189733620873419002Island text1.7239720.096726.0994Neighbours11BLASTN6189733.gbk
406590081661609926019Island text2.157526.448437.2205Neighbours11BLASTN+6590081.gbk