Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009954: Caldivirga maquilingensis IC-167, complete genome

NCBI: NC_009954

Host Lineage: Caldivirga maquilingensis; Caldivirga; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Hyperthermophilic crenarchaeota. Caldivirga maquilingensis was isolated from an acidic hot spring in the Philippines. It is a microaerophilic heterotroph and is able to use sulfur, thiosulfate, and sulfate as electron acceptors.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1117895*14379225898Island text1.9905140.379928.6583Neighbours7BLASTN117895.gbk
21520417154293322517Island text1.8160532.569244.0674Neighbours7BLASTNIslandViewer 1520417.gbk
31595743*161762221880Island text1.6624931.70747.8723Neighbours71595743.gbk
41893206*191359920394Island text1.5638826.648631.3081Neighbours7BLASTN1893206.gbk