Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009952: Dinoroseobacter shibae DFL 12, complete genome

NCBI: NC_009952

Host Lineage: Dinoroseobacter shibae; Dinoroseobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This aerobic anoxygenic phototroph was isolated from cultivated marine dinoflagellates originally from the Bay of Tokyo, Japan. Liquid cultures grown in the dark are distinctly pink, while colonies on complex agar media are dark red.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1366959*40184134883Island text3.2886529.091125.5202Neighbours11BLASTN+IslandViewer 366959.gbk
244202947428932261Island text1.6734522.367123.926Neighbours11BLASTN+IslandViewer 442029.gbk
352645655182825373Island text1.5956624.775921.7196Neighbours11BLASTN+IslandViewer 526456.gbk
4592000*63739445395Island text2.9322222.854921.0135Neighbours11BLASTN+IslandViewer 592000.gbk
5749426*77238922964Island text1.5833219.58934.919Neighbours11BLASTN+749426.gbk
6997950*102059922650Island text1.5138621.249618.0212Neighbours11BLASTN+IslandViewer 997950.gbk
71680682*171856437883Island text1.5801722.500425.8958Neighbours11BLASTN+IslandViewer 1680682.gbk
81984955*201717932225Island text2.3387629.526622.307Neighbours11BLASTN+IslandViewer 1984955.gbk
92217877*224661928743Island text2.4634128.809522.0596Neighbours11BLASTN+IslandViewer 2217877.gbk
102381601*241824736647Island text1.5072921.843514.5197Neighbours11BLASTN+IslandViewer 2381601.gbk
112661268*268533524068Island text1.6021227.272615.7425Neighbours11BLASTN+IslandViewer 2661268.gbk
122752500*277343720938Island text1.6653925.371724.2069Neighbours11BLASTN+IslandViewer 2752500.gbk
133522370*356180439435Island text1.8759326.1620.597Neighbours11BLASTN+IslandViewer 3522370.gbk
143596399*364016143763Island text1.68221.065620.8528Neighbours11BLASTN+IslandViewer 3596399.gbk