Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009943: Candidatus Desulfococcus oleovorans Hxd3, complete genome

NCBI: NC_009943

Host Lineage: Desulfococcus oleovorans; Desulfococcus; Desulfobacteraceae; Desulfobacterales; Proteobacteria; Bacteria

General Information: An alkane-degrading sulfate-reducing Gram-negative bacterium isolated from the saline water phase of an oil-water separator from a northern German oil field. Desulfococcus oleovorans, originally designated Desulfobacterium oleovorans, was isolated using hexadecane as a carbon source and has been used to determine the mechanism of anaerobic hydrocarbon degradation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127215829931927162Island text1.747435.499830.7367Neighbours33BLASTNIslandViewer 272158.gbk
2305854*33902633173Island text2.2168137.617731.232Neighbours33BLASTN+IslandViewer 305854.gbk
3677324*72912151798Island text1.53929.491445.3009Neighbours33BLASTN677324.gbk
4748788*77355124764Island text1.8397134.795925.5756Neighbours33BLASTN+IslandViewer 748788.gbk
594083596563124797Island text1.7316633.222332.4918Neighbours33BLASTNIslandViewer 940835.gbk
697090199500524105Island text1.6471634.244334.1863Neighbours33BLASTN+IslandViewer 970901.gbk
71043210106812024911Island text2.1752637.981232.0149Neighbours11BLASTNIslandViewer 1043210.gbk
81262000128409922100Island text1.5082231.17125.6182Neighbours33BLASTNIslandViewer 1262000.gbk
91364536139407129536Island text2.1384137.737830.5804Neighbours33BLASTNIslandViewer 1364536.gbk
101499111*152068621576Island text1.6470636.890834.3196Neighbours33BLASTNIslandViewer 1499111.gbk
111637582*166083323252Island text1.8103638.886226.7702Neighbours33BLASTN+IslandViewer 1637582.gbk