Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009937: Azorhizobium caulinodans ORS 571, complete genome

NCBI: NC_009937

Host Lineage: Azorhizobium caulinodans; Azorhizobium; Xanthobacteraceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This species is a stem-nodulating nitrogen-fixing organism isolated from Sesbania rostrata. Azorhizobium caulinodans ORS571 is a microsymbiont of the water-tolerant tropical legume Sesbania rostrata.A. caulinodans ORS571 is able to fix nitrogen in the free-living state, which is not the case for most rhizobia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1530827690623825Island text1.4905918.464311.4143Neighbours11BLASTN+53082.gbk
2311242*33077419533Island text1.4680917.096331.368Neighbours11BLASTN311242.gbk
3412302*43181319512Island text1.5929917.167218.4229Neighbours11BLASTN+412302.gbk
4673820*70064926830Island text2.9392722.10425.0936Neighbours11BLASTN673820.gbk
5958576*98323924664Island text2.1834620.855514.9915Neighbours11BLASTN+IslandViewer 958576.gbk
61733196*175210518910Island text1.5418118.953712.0873Neighbours11BLASTN+1733196.gbk
73324793*334803023238Island text1.9318818.944623.0484Neighbours11BLASTN+IslandViewer 3324793.gbk
83748885*376963220748Island text1.6072120.27315.4784Neighbours11BLASTN+IslandViewer 3748885.gbk
94090404*411705426651Island text1.9455520.449718.8041Neighbours11BLASTN+IslandViewer 4090404.gbk
104122652*415024227591Island text1.5809922.284820.0827Neighbours11BLASTN+IslandViewer 4122652.gbk
114350132437409923968Island text2.2689919.900734.3388Neighbours11BLASTN+IslandViewer 4350132.gbk
124392108441736925262Island text2.5338821.659730.5491Neighbours11BLASTN+IslandViewer 4392108.gbk
134768500*479259924100Island text2.5750920.141421.7979Neighbours11BLASTN4768500.gbk
145033152*505948226331Island text2.9222921.810425.0754Neighbours11BLASTN5033152.gbk