Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009922: Alkaliphilus oremlandii OhILAs, complete genome

NCBI: NC_009922

Host Lineage: Alkaliphilus oremlandii; Alkaliphilus; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Arsenate-reducing bacterium. Alkaliphilus oremlandii was isolated from Ohio River sediment, USA. This organism can reduce arsenate to arsenite, making it a potential bioremediation agent. It is a versatile strict anaerobic, spore-forming, low G+C gram positive bacterium that can ferment glycerol, fructose, and lactate, as well as respire arsenate and thiosulfate.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2276322763Island text3.6317126.819648.3445Neighbours21BLASTN1.gbk
242696*6792725232Island text3.1664725.778446.7589Neighbours21BLASTN+42696.gbk
331587033942123552Island text2.1592923.887438.9877Neighbours21BLASTN+315870.gbk
441143444552934096Island text2.1168625.395633.5161Neighbours21BLASTN411434.gbk
5490500*50921918720Island text1.8049122.261138.1411Neighbours21BLASTN+490500.gbk
6542500*57462332124Island text2.4573925.060443.2087Neighbours21BLASTN542500.gbk
786826289020421943Island text1.7358524.097235.8489Neighbours21BLASTN868262.gbk
894453896923624699Island text1.9407222.954236.2651Neighbours21BLASTN944538.gbk
91917271*193756720297Island text3.2554633.632341.5895Neighbours21BLASTN+1917271.gbk
102323083*234856125479Island text1.8980223.367633.6825Neighbours21BLASTN2323083.gbk
112487492251068223191Island text1.7649722.163836.7523Neighbours21BLASTN+2487492.gbk
122556033258448628454Island text2.1698925.167437.7607Neighbours21BLASTN2556033.gbk
132590317*261009919783Island text3.8668128.783651.7968Neighbours344BLASTN2590317.gbk
142672396*269704024645Island text2.1798423.65738.2426Neighbours21BLASTN2672396.gbk
152721343*276393542593Island text2.4920824.188739.067Neighbours21BLASTN+2721343.gbk
162766397*278959923203Island text1.6563124.378933.4282Neighbours21BLASTN+2766397.gbk
172800253281965419402Island text2.3506523.425343.7386Neighbours21BLASTN2800253.gbk
182850320*287198821669Island text2.1719323.313643.0756Neighbours21BLASTNIslandViewer 2850320.gbk