Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009921: Frankia sp. EAN1pec, complete genome

NCBI: NC_009921

Host Lineage: Frankia; Frankia; Frankiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated at the Kettering Research Laboratory in Ohio, USA by M. Lalonde in 1978. It is resistant to lincomycin, kasugamycin, novobiocin, and, like many actinomycetes, to nalidixic acid. This strain is also resistant to elevated levels of lead, chromate, and arsenate.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1510347645625423Island text1.4706116.524822.7433Neighbours11BLASTN51034.gbk
2465683*48782722145Island text2.4599113.31479.97686Neighbours11BLASTN+465683.gbk
352200056210240103Island text1.9600513.578711.9032Neighbours11BLASTN+IslandViewer 522000.gbk
4565947*58537019424Island text1.8135612.986414.6973Neighbours11BLASTN+IslandViewer 565947.gbk
5593665*61388920225Island text1.9251513.509220.3009Neighbours11BLASTNIslandViewer 593665.gbk
61611132163853427403Island text2.2213915.368423.3703Neighbours11BLASTN+IslandViewer 1611132.gbk
71645380*166750622127Island text1.5709414.682610.793Neighbours11BLASTN+IslandViewer 1645380.gbk
81668306*172598657681Island text1.6132214.027610.815Neighbours11BLASTN+1668306.gbk
91736000*175436518366Island text1.6958112.94387.94859Neighbours11BLASTN+IslandViewer 1736000.gbk
101813500*184695033451Island text3.2974319.408317.4481Neighbours11BLASTN+IslandViewer 1813500.gbk
112565640259743531796Island text3.9252920.238516.7097Neighbours11BLASTN+IslandViewer 2565640.gbk
122605721262856122841Island text1.8732413.363311.0001Neighbours11BLASTN+IslandViewer 2605721.gbk
133073287309378120495Island text1.749413.938112.6215Neighbours11BLASTNIslandViewer 3073287.gbk
143098271*316510166831Island text2.5179317.085718.856Neighbours11BLASTN+IslandViewer 3098271.gbk
153255833327496419132Island text1.5459213.287310.1535Neighbours11BLASTN+3255833.gbk
163316962334366126700Island text1.955412.746215.2881Neighbours11BLASTN+IslandViewer 3316962.gbk
173384116*340895324838Island text1.7314114.011312.3563Neighbours11BLASTN+IslandViewer 3384116.gbk
183419978344561625639Island text1.9700713.93113.8665Neighbours11BLASTN+IslandViewer 3419978.gbk
193455783347739221610Island text1.504513.40597.80241Neighbours11BLASTN+IslandViewer 3455783.gbk
203473854*352959955746Island text1.7983414.214.5662Neighbours11BLASTN+IslandViewer 3473854.gbk
213551036*362235971324Island text1.7629514.263213.8115Neighbours11BLASTN+IslandViewer 3551036.gbk
223666898374071873821Island text2.2337413.846412.3514Neighbours11BLASTN+IslandViewer 3666898.gbk
233803671382701523345Island text1.914915.551514.5243Neighbours11BLASTN+3803671.gbk
243854969389148136513Island text1.8089914.060411.8932Neighbours11BLASTN+3854969.gbk
253999040401805519016Island text1.5527213.369414.1247Neighbours11BLASTN3999040.gbk
264035225*407387638652Island text2.8293916.402617.4166Neighbours11BLASTN+IslandViewer 4035225.gbk
274186000420611220113Island text1.6145212.889110.86Neighbours11BLASTN+IslandViewer 4186000.gbk
284399000442459925600Island text1.9051815.968725.897Neighbours11BLASTN4399000.gbk
294757148*478108523938Island text1.7503714.086313.509Neighbours11BLASTN+IslandViewer 4757148.gbk
304903688492656422877Island text1.4506815.685828.286Neighbours11BLASTN+4903688.gbk
314948500497677728278Island text1.578416.079428.186Neighbours11BLASTN+IslandViewer 4948500.gbk
325202607*524409941493Island text1.9507914.938712.523Neighbours11BLASTN+IslandViewer 5202607.gbk
335275694530509929406Island text1.7482615.572614.2177Neighbours11BLASTN+IslandViewer 5275694.gbk
345331565535374522181Island text1.8453814.617811.5943Neighbours11BLASTN+IslandViewer 5331565.gbk
355371483538959918117Island text2.682513.594410.2997Neighbours11BLASTN+IslandViewer 5371483.gbk
365400663541981119149Island text1.8357913.969321.6561Neighbours11BLASTN+5400663.gbk
375508000553009922100Island text1.9093113.81027.88768Neighbours11BLASTN+5508000.gbk
385531972555201920048Island text1.5147214.045114.6099Neighbours11BLASTN+5531972.gbk
395609770565619046421Island text1.7323815.2311.7986Neighbours11BLASTN+IslandViewer 5609770.gbk
405681677570432122645Island text1.8154913.80718.08868Neighbours11BLASTN+5681677.gbk
415787437580894021504Island text1.4507713.551826.0141Neighbours11BLASTN5787437.gbk
426421387644194720561Island text1.6714714.088618.4949Neighbours11BLASTN+IslandViewer 6421387.gbk
436447151*647028723137Island text1.5450813.770712.2244Neighbours11BLASTN6447151.gbk
446483660651171428055Island text1.6101113.899112.3317Neighbours11BLASTN+6483660.gbk
456691089673309942011Island text2.5471815.056218.5952Neighbours11BLASTN+IslandViewer 6691089.gbk
467249249727260723359Island text1.459215.62519.7588Neighbours11BLASTN+7249249.gbk
477660795767870217908Island text1.9035413.329917.1702Neighbours11BLASTN+IslandViewer 7660795.gbk
487964128798402319896Island text1.5565613.825419.5639Neighbours11BLASTN7964128.gbk
498147947*818742439478Island text1.9267613.699719.5144Neighbours11BLASTN+IslandViewer 8147947.gbk
508215996*825909943104Island text1.6037514.248211.7616Neighbours11BLASTN+IslandViewer 8215996.gbk
518549757862261572859Island text1.9987714.954212.8661Neighbours11BLASTN+IslandViewer 8549757.gbk
528648994867311024117Island text1.994313.63029.14106Neighbours11BLASTN+8648994.gbk
538717659874014722489Island text1.7421212.995510.5616Neighbours11BLASTN8717659.gbk