Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009883: Rickettsia bellii OSU 85-389, complete genome

NCBI: NC_009883

Host Lineage: Rickettsia bellii; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Transmitted via American ticks. This organism represents the third group of Rickettsial species and is separate from the spotted fever group and the typhus group. This organism is transovarially transmitted in American ticks and shows the largest range of host organisms including Dermacentor and Amblyomma.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1140890*16003119142Island text1.7310312.755425.7157Neighbours21BLASTN+140890.gbk
2277409*30010322695Island text1.5045714.168926.0354Neighbours21BLASTN+277409.gbk
334306736795424888Island text1.5765915.284526.7207Neighbours21BLASTN343067.gbk
4383500*40604922550Island text1.9183713.651825.176Neighbours21BLASTN+383500.gbk
564149166009918609Island text1.7909112.755419.0462Neighbours21BLASTN+641491.gbk
6871594*89386122268Island text1.5668113.914223.9052Neighbours21BLASTN871594.gbk
71197500121859921100Island text2.408813.734226.9849Neighbours21BLASTN+1197500.gbk
81262000*128409922100Island text1.5987914.244926.6598Neighbours21BLASTN+1262000.gbk
91429000145248923490Island text1.6231416.659126.9327Neighbours21BLASTN1429000.gbk
101492425*152313430710Island text2.0304118.979129.9614Neighbours21BLASTN+1492425.gbk