Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009850: Arcobacter butzleri RM4018, complete genome

NCBI: NC_009850

Host Lineage: Arcobacter butzleri; Arcobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Arcobacter butzleri RM4018 was isolated from a human patient with gastroenteritis. Causes gastroenteritis in humans. Arcobacter butzleri is a member of the family Campylobacteraceae, related to the human pathogenic Campylobacter spp. and the environmental Sulfurospirillum spp. A. butzleri is mainly found in livestock and water/marine environments and can cause gastroenteritis and bacteremia in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111076*3581624741Island text1.7277817.734728.3376Neighbours21BLASTN11076.gbk
241309343688323791Island text1.5527514.560213.0414Neighbours21BLASTN413093.gbk
3445000*46374218743Island text1.5235613.056322.7129Neighbours21BLASTN445000.gbk
4566755*58685620102Island text1.542814.013924.869Neighbours21BLASTN566755.gbk
5628024*64679818775Island text1.4958614.81648.99622Neighbours21BLASTN628024.gbk
6661802*68186120060Island text1.9680213.855825.4355Neighbours21BLASTN661802.gbk
7757418*77908521668Island text1.9803816.602329.7278Neighbours21BLASTN757418.gbk
893437496273628363Island text2.3634716.820931.0288Neighbours21+934374.gbk
9972692*99808925398Island text1.7441314.124321.3034Neighbours21BLASTN972692.gbk
101011293*103921027918Island text1.4950714.457727.1409Neighbours21BLASTN1011293.gbk
111131492*115167320182Island text1.750914.202312.1675Neighbours21BLASTN+1131492.gbk
121498111151784419734Island text1.6816614.705428.3287Neighbours21BLASTN+1498111.gbk
131601982*162099819017Island text1.5238213.965223.1027Neighbours21BLASTN+1601982.gbk
141651410168590434495Island text1.944814.909825.334Neighbours21BLASTN+1651410.gbk
151822239184059918361Island text1.5106415.260221.9028Neighbours21BLASTN1822239.gbk
161862602*190488342282Island text1.606113.97517.9434Neighbours21BLASTN+1862602.gbk
171954969*197355318585Island text1.7654213.983525.7553Neighbours21BLASTN1954969.gbk
182169459*220320233744Island text1.8675815.042127.7841Neighbours21BLASTN2169459.gbk