Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009848: Bacillus pumilus SAFR-032, complete genome

NCBI: NC_009848

Host Lineage: Bacillus pumilus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus pumilus SAFR-032 was isolated from the Spacecraft Assembly Facility at NASA Jet Propulsion Laboratory, USA and produces spores highly resistant to UV radiation. A ubiquitous soil organism. Bacillus pumilus is a naturally occurring, ubiquitous soil microorganism. Commonly found in a variety of food commodities, some strains have developed an increased tolerance to gamma irradiation. This bacterium colonizes the root zone of some plants, where it inhibits soil-borne fungal diseases and nematodes. It is also undergoing evaluation for commercial production of cellulase, an enzyme used for conversion of cellulolytic materials to soluble sugars or solvents.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116137318435122979Island text1.3868926.708440.5957Neighbours21BLASTN+161373.gbk
2354202*38409929898Island text1.5662125.768839.4539Neighbours21BLASTN+354202.gbk
358277561536832594Island text2.0248927.337531.6805Neighbours21BLASTNIslandViewer 582775.gbk
4720510*74674026231Island text3.1230927.376820.4724Neighbours21BLASTNIslandViewer 720510.gbk
577500079992124922Island text1.5618533.41245.3336Neighbours21BLASTN775000.gbk
61494253*151878524533Island text1.5014424.385945.6694Neighbours21BLASTN+1494253.gbk
71542978*156391120934Island text1.6720825.056737.0228Neighbours21BLASTN1542978.gbk
82335265235376118497Island text2.1223423.443641.7651Neighbours21BLASTN+2335265.gbk
92755874277646320590Island text1.5488324.08542.5691Neighbours21BLASTN+2755874.gbk
103190619321885828240Island text2.9294728.109618.2007Neighbours21BLASTN+IslandViewer 3190619.gbk
113582384360261620233Island text2.437426.189912.335Neighbours21BLASTN+IslandViewer 3582384.gbk
123631243365631425072Island text2.4677225.415321.0491Neighbours21BLASTN+3631243.gbk