Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009832: Serratia proteamaculans 568, complete genome

NCBI: NC_009832

Host Lineage: Serratia proteamaculans; Serratia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated as a root endophyte from Populus trichocarpa. This species is associated with a serious form of pneumonia in humans, and is the causal agent of amber disease in the grass grub. Interestingly, it also contains an inducible activator which promotes the growth of soybeans under greenhouse conditions.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1110239*13543725199Island text2.9644242.877824.7419Neighbours41BLASTN+IslandViewer 110239.gbk
235829138209923809Island text1.373731.584425.265Neighbours51BLASTNIslandViewer 358291.gbk
3426993*45559928607Island text2.2914540.370237.4479Neighbours41BLASTN+IslandViewer 426993.gbk
4622969*65041627448Island text3.0513444.196523.2286Neighbours41BLASTN+IslandViewer 622969.gbk
51280938*130408723150Island text2.1451437.760931.6881Neighbours41BLASTN+IslandViewer 1280938.gbk
61664238169623231995Island text4.6962748.671220.8513Neighbours41BLASTN+IslandViewer 1664238.gbk
71719149175798638838Island text5.0830548.006726.3908Neighbours41BLASTNIslandViewer 1719149.gbk
81946401197178325383Island text1.8602335.90833.4824Neighbours51BLASTNIslandViewer 1946401.gbk
92211154*224619035037Island text2.2912638.787124.9894Neighbours41BLASTN+IslandViewer 2211154.gbk
102460027248123021204Island text1.8981537.660718.9565Neighbours41BLASTN+IslandViewer 2460027.gbk
112596344262148625143Island text1.8012734.308624.9442Neighbours41BLASTN+IslandViewer 2596344.gbk
122969376*299269223317Island text1.514529.255834.2246Neighbours41BLASTN+2969376.gbk
133313058333643323376Island text1.3716530.514331.1426Neighbours41BLASTNIslandViewer 3313058.gbk
143500000352233422335Island text1.3899930.909536.1554Neighbours41BLASTNIslandViewer 3500000.gbk
153703202372686423663Island text2.2212639.800931.7196Neighbours41BLASTN+IslandViewer 3703202.gbk
164136878*415598519108Island text1.461431.985745.9374Neighbours51BLASTN+4136878.gbk
174269804429650026697Island text1.6957529.289128.5534Neighbours41BLASTN+IslandViewer 4269804.gbk
184482500*450993127432Island text2.3043537.560630.5329Neighbours41BLASTN+IslandViewer 4482500.gbk
194521585455112429540Island text1.7773736.003537.9914Neighbours41BLASTN+IslandViewer 4521585.gbk
204564752461773352982Island text1.6556831.933837.2263Neighbours41BLASTN+IslandViewer 4564752.gbk
215214850524051125662Island text1.9112133.312132.8021Neighbours41BLASTN+5214850.gbk
225369566*539353223967Island text1.5368930.696722.317Neighbours41BLASTN+IslandViewer 5369566.gbk