Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009828: Thermotoga lettingae TMO, complete genome

NCBI: NC_009828

Host Lineage: Thermotoga lettingae; Thermotoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Thermotoga lettingae strain TMO was isolated from a methanol-degrading, sulfate-reducing bioreactor. Thermophilic, methanol-degrading organism. This organism, a member of the Thermotogales, has the characteristic sheath-like envelope which extends beyond the cell wall. The oxidation of methanol was more efficient when Thermotoga lettingae was grown as a co-culture with Methanothermobacter thermautotrophicus or Thermodesulfovibrio yellowstonii.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1469778*51143441657Island text1.5292321.693941.1051Neighbours21BLASTN+469778.gbk
2600349*63274832400Island text2.1544324.96542.3512Neighbours21BLASTN600349.gbk
31474970149745622487Island text1.5925321.777728.4728Neighbours21BLASTN+1474970.gbk
41530732*155564824917Island text1.3382120.993439.8221Neighbours21BLASTN+1530732.gbk