Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009802: Campylobacter concisus 13826, complete genome

NCBI: NC_009802

Host Lineage: Campylobacter concisus; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Campylobacter concisus 13826 is a gastrointestinal clinical isolate. Members of this genus are one of the most common causes of bacterial gastroenteritis (campylobacteriosis). Usually the symptoms are abdominal pain, fever, diarrhea, and cramps, but the illness can sometimes be fatal and some infected individuals develop a syndrome (Guillain-Barre) in which the nerves connecting the spinal cord to the brain are damaged. C. jejuni is the main cause of campylobacteriosis, but other species can also cause infection, including C. coli, C. upsaliensis, and C. concisus. Campylobacter concisus was first isolated from the human oral cavity in cases of gingivitis; however the role it plays in periodontal disease is unclear. This organism has also been isolated from children and immunocompromised patients with gastrointestinal disease. C. concisus is a genetically diverse species, comprised of at least four genomospecies.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1114749*15935044602Island text2.3102926.534125.9992Neighbours21BLASTN114749.gbk
2197482*23893641455Island text2.8163827.377426.0151Neighbours21BLASTN+197482.gbk
335264137883026190Island text2.0577823.341717.0185Neighbours21+IslandViewer 352641.gbk
4647901*67009922199Island text1.5162824.446728.2251Neighbours21BLASTN647901.gbk
5931129*95495823830Island text2.3057724.424219.2681Neighbours21BLASTN+931129.gbk
61077926*110089622971Island text1.3251223.717237.6599Neighbours361BLASTN+1077926.gbk
71525144*156396938826Island text2.7647428.398222.3357Neighbours21BLASTN+1525144.gbk
81570215*159609925885Island text1.6380226.729751.6354Neighbours21BLASTN+IslandViewer 1570215.gbk
91659257*168189722641Island text1.7259423.914825.9739Neighbours361BLASTN+1659257.gbk
101827138*185006122924Island text1.643232.025641.478Neighbours361BLASTN+1827138.gbk
111886000*190809922100Island text1.4485825.91236.2773Neighbours361BLASTN1886000.gbk
121917917*194043822522Island text1.5689626.872640.0171Neighbours361BLASTN1917917.gbk
131948119197227324155Island text1.5409634.349345.5479Neighbours211948119.gbk
141977596200025322658Island text1.5373831.0550.1133Neighbours361+1977596.gbk