Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009792: Citrobacter koseri ATCC BAA-895, complete genome

NCBI: NC_009792

Host Lineage: Citrobacter koseri; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter koseri ATCC BAA-895 is a clinical isolate from a human infant. Causative agent of neonatal meningitis. Citrobacter koseri, previously known as Citrobacter diversus, Levinea diversus or Levinea malonatica resides in a wide range of environments, including soil, water and food products. It is an occasional inhabitant of human and animal intestines, but is mainly characterized as being a causative agent of neonatal meningitis with an extreme high rate of multiple brain abscess initiations and a concomitant high moratility rate. The bacteria are used in neonatal rat models to study the mechanism of blood-brain barrier penetration, host immune response evasion and its resistance to phagocytotic killing.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
164288166509922219Island text1.9162736.337229.4768Neighbours41BLASTN642881.gbk
271495374483829886Island text3.9594344.046430.3801Neighbours41BLASTN714953.gbk
380833283532926998Island text1.9790235.027434.8109Neighbours51BLASTNIslandViewer 808332.gbk
485922888559926372Island text1.7285132.146535.3731Neighbours41BLASTNIslandViewer 859228.gbk
592315594824825094Island text1.6516932.206121.3102Neighbours41BLASTNIslandViewer 923155.gbk
61345500136809322594Island text1.977532.906531.1786Neighbours41BLASTN1345500.gbk
71479779150315123373Island text1.5021533.256315.7936Neighbours41BLASTN1479779.gbk
81739970176500625037Island text2.0115535.671328.4722Neighbours41BLASTNIslandViewer 1739970.gbk
91770106179490624801Island text1.679334.363726.5884Neighbours41BLASTNIslandViewer 1770106.gbk
102688747271473325987Island text1.8107834.585529.7713Neighbours41BLASTNIslandViewer 2688747.gbk
113225965324431718353Island text1.6327928.897125.1858Neighbours41BLASTNIslandViewer 3225965.gbk
123245368328222336856Island text3.4178745.186824.232Neighbours21BLASTNIslandViewer 3245368.gbk
133665369370602240654Island text5.7002151.819520.7668Neighbours41BLASTNIslandViewer 3665369.gbk
144017510*404823430725Island text1.8859134.976827.2813Neighbours41BLASTNIslandViewer 4017510.gbk
154658909468286123953Island text2.008336.181618.803Neighbours41BLASTN4658909.gbk
164693152471999926848Island text1.3131330.325926.3004Neighbours41BLASTNIslandViewer 4693152.gbk