Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009784: Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence

NCBI: NC_009784

Host Lineage: Vibrio campbellii; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Halophilic marine bacterium. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species is comprised of halophilic marine microbes.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125385227160217751Island text1.758227.760224.4Neighbours21BLASTNIslandViewer 253852.gbk
21231791125420022410Island text1.5610929.274125.271Neighbours21BLASTNIslandViewer 1231791.gbk
31591851161450422654Island text1.4490345.002452.1562BLASTNIslandViewer 1591851.gbk
42129069215319824130Island text2.1064927.656919.235Neighbours21BLASTNIslandViewer 2129069.gbk