Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009783: Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence

NCBI: NC_009783

Host Lineage: Vibrio campbellii; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Halophilic marine bacterium. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species is comprised of halophilic marine microbes.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
164950066965220153Island text1.6980231.145628.5918Neighbours21BLASTNIslandViewer 649500.gbk
267044970336932921Island text4.3141738.400219.6967Neighbours21BLASTNIslandViewer 670449.gbk
31637000165503318034Island text1.7707530.295522.384Neighbours21BLASTNIslandViewer 1637000.gbk
41665610168785322244Island text1.7352930.64223.2892Neighbours21BLASTNIslandViewer 1665610.gbk
51956000198032024321Island text1.5478529.295425.5695Neighbours21BLASTNIslandViewer 1956000.gbk
62306953232578818836Island text1.6263830.599520.4044Neighbours21BLASTNIslandViewer 2306953.gbk