Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009782: Staphylococcus aureus subsp. aureus Mu3, complete genome

NCBI: NC_009782

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Isolated from the purulent sputum of a Japanese patient with pneumonia after surgery who had failed vancomycin therapy. Causes skin infections. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116000*3711021111Island text1.586820.260328.33Neighbours21BLASTN+IslandViewer 16000.gbk
232589234826022369Island text1.6823318.354835.0347Neighbours21BLASTN325892.gbk
3596847*61766720821Island text1.5548721.050230.5295Neighbours21BLASTN596847.gbk
492027295475434483Island text2.3995720.211236.4012Neighbours21BLASTNIslandViewer 920272.gbk
51327340*135080023461Island text1.6934417.938430.7589Neighbours21BLASTN1327340.gbk
61510396155316542770Island text1.6863129.496844.2092Neighbours325BLASTN1510396.gbk
71881722*190409922378Island text1.7326720.554334.2345Neighbours21BLASTN1881722.gbk
82091815211324121427Island text1.8059218.762726.6963Neighbours21BLASTN2091815.gbk
92230000*225234622347Island text1.5131420.020729.2362Neighbours21BLASTN2230000.gbk
102362000*237977917780Island text1.5694119.464426.9095Neighbours21BLASTN2362000.gbk
112519379253836318985Island text1.7289219.090530.9965Neighbours21BLASTN2519379.gbk
122627884264707019187Island text2.0754119.619425.3563Neighbours21BLASTN+IslandViewer 2627884.gbk